Publications | Tao Lab

2024 🔼

Li WJ, Mei WY, Jiang HW, et al. (2024). Blocking the PD-1 signal transduction by occupying the phosphorylated ITSM recognition site of SHP-2. SCIENCE CHINA Life Sciences. [Link]
Gustav N. Sundell, Sheng-Ce Tao. (2024). Phage immunoprecipitation and sequencing—a versatile technique for mapping the antibody reactome. Molecular & cellular proteomics. [Link]
Cai J, Li Y, et al. (2024). Developing deep LSTMs with later temporal attention for predicting COVID-19 severity, clinical outcome, and antibody level by screening serological indicators over time. IEEE J Biomed Health Inform. [Link]
Chen H, He X, et al. (2024). Elucidating the network interactions between 21 secreted Mycobacterium tuberculosis proteins and host proteins: the role of DnaK in enhancing Mtb survival via LDHB ABBS. [Link]

2023 🔼

Zhu YS, Odiwuor N, et al. (2023). Rapid and Accurate Detection of SARS-CoV-2 Using an iPad-Controlled, High-Throughput, Portable, and Multiplex Hive-Chip Platform (HiCube). ACS Sens. [Link]
Bao LY, Hu J, et al. (2023). Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nat Commun. [Link]
孔维莎, 江何伟, 郭书娟, 陶生策. (2023). 病毒受体鉴定技术最新进展. 生命的化学. [Link]
Jiang HW, Li Y & Tao SC. (2023). SARS-CoV-2 peptides/epitopes for specific and sensitive diagnosis. Cell Mol Immunol. [Link]
Cao YN, Chen LL, et al. (2023). Was Wuhan the early epicenter of the COVID-19 pandemic? - A critique. Natl.Sci.Review. [Link]
Jiang HW, Chen H, et al. (2023). Specific Pupylation as IDEntity Reporter (SPIDER) for the identification of Protein-Biomolecule interactions. Sci China Life Sci. [Link]

2022 🔼

Zhu YS, Zhang M, et al. (2022). Nucleic acid testing of SARS-CoV-2: A review of current methods, challenges, and prospects. Front Microbiol. [Link]
Ou FY, Lai DY, et al. (2022). Ultrasensitive monitoring of SARS-CoV-2-specific antibody responses based on a digital approach reveals one week of IgG seroconversion. Biosens. Bioelectron. [Link]
Zhao YX, Fan BC, et al. (2022). Characterization and epitope mapping of monoclonal antibodies against PEDV N protein. Virology. [Link]
Zhu YS, Zhang M, et al. (2022). Nucleic acid testing of SARS-CoV-2: A review of current methods, challenges, and prospects. Front.Microbiol. [Link]
Lai DY, Xue JB, et al. (2022). Longitudinal neutralization activities on authentic Omicron variant provided by three doses of BBIBP-CorV vaccination during one year. Proteomics. [Link]
Zhu A, et al. (2022). Age- and Severity-Associated Humoral Immunity Response in COVID-19 Patients: A Cohort Study from Wuhan, China. J.Clin.Med. [Link]
Wang XN, et al. (2022). Identification of sitagliptin binding proteins by affinity purification mass spectrometry. ABBS. [Link]
Qi H, et al. (2022). Current advances in antibody-based serum biomarker studies: From protein microarray to phage display. Proteomics Clin. Appl. [Link]
Chen LY, Pang PF, et al. (2022). Evaluation of Spike Protein Epitopes by Assessing the Dynamics of Humoral Immune Responses in Moderate COVID-19. Front. Immunol. [Link]
Lai DY, Jiang HW, Li Yang, Zhang HN, Tao SC*. (2022). SARS-CoV-2 proteome microarray for COVID-19 patient sera samples profiling. STAR Protocols. [Link]
Xue JB, Lai DY, et al. (2022). Landscape of the RBD-specific IgG, IgM and IgA responses triggered by the inactivated virus vaccine against the Omicron variant. Cell discovery. [Link]

2021 🔼

Jiang HW, Tao SC. (2021). Quantitative plasma proteome profiling of COVID-19 patients with mild and moderate symptoms. Ebiomedicine. [Link]
Lei Q, Yu CZ, Li Y, et al. (2021). Anti-SARS-CoV-2 IgG responses are powerful predicting signatures for the outcome of COVID-19 patients. Journal of advanced research. [Link]
Deutsch EW, Omenn GS, et al. (2021). Advances and Utility of the Human Plasma Proteome. Journal of proteome research. [Link]
Xu ZW, Li Y, et al. (2021). COVID-ONE-hi: The One-stop Database for COVID-19 specific Humoral Immunity and Clinical Parameters. Genomics, Proteomics & Bioinformatics. [Link]
Zhang HN, Xue JB, et al. (2021). EASINESS: E. coli Assisted Speedy affINity-maturation Evolution SyStem. Frontiers in immunology. [Link]
Xue JB, Tao SC*. (2021). Epitope analysis of Anti-SARS-CoV-2 neutralizing antibodies. Current Medical Sciences. [Link]
Ma ML, Shi DW, et al. (2021). Systematic profiling of SARS-CoV-2-specific IgG responses elicited by an inactivated virus vaccine identifies peptides and proteins for predicting vaccination efficacy. Cell Discovery. [Link]
Shi HM, Li T, et al. (2021). MgrB inactivation confers trimethoprim resistance in Escherichia coli. Frontiers in Microbiology. [Link]
Li Y, Lai DY, Tao SC*. (2021). SARS-CoV-2 Spike linear epitope scanning via a peptide microarray through sera profiling. STAR Protocols. [Link]
Li Y, Xu ZW, et al. (2021). Antibody landscape against SARS-CoV-2 proteome reveals significant differences between non-structural/ accessory proteins and structural proteins. Cell reports. [Link]
Zheng YX, Wang L, et al. (2021). Nsp2 has the potential to be a drug target revealed by global identification of SARS-CoV-2 Nsp2-interacting proteins. ABBS. [Link]
Jia H, Zhang A, et al. (2021). A graphene oxide coated tapered microfiber acting as a super-sensor for rapid detection of SARS-CoV-2. Lab chip. [Link]
Li Y, Ma ML, et al. (2021). Linear epitope landscape of the SARS-CoV-2 Spike protein constructed from 1,051 COVID-19 patients. Cell Reports. [Link]
Qu DH, Zhao XH, Sun Y, Wu FL, Tao SC*. (2021). Mycobacterium tuberculosis thymidylyltransferase RmlA is negatively regulated by Ser/Thr protein kinase PknB. Fontiers in microbiology. [Link]
Qi H, Ma ML, et al. (2021). Systematic profiling of SARS-CoV-2-specific IgG epitopes at amino acid resolution. Cell Mol Immunol. [Link]
Y Li, DY Lai, et al. (2021). Systematic evaluation of IgG responses to SARS-CoV-2 spike protein-derived peptides for monitoring COVID-19 patients. Cellular and Molecular Immunology. [Link]
Ma ML, Qi H, et al. (2021). The binding epitope of Sintilimab on PD-1 revealed by AbMap. ABBS. [Link]
Qi H, Ma ML, Lai DY, Tao SC*. (2021). Display technology: an ideal platform for coupling protein and nucleotide acid. ABBS. [Link]
Qi H, Ma ML, et al. (2021). Antibody binding epitope Mapping (AbMap) of hundred antibodies in a single run. Mol Cell Proteomics. [Link]
Lei Q, Li Y, et al. (2021). Antibody dynamics to SARS-CoV-2 in asymptomatic COVID-19 infections. Allergy. [Link]

2020 🔼

Li KK, Qu DH, et al. (2020). Global discovery the PstP interactions using Mtb proteome microarray and revealing novel connections with EthR. J Proteomics. [Link]
Yin W, Mao C, et al. (2020). Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir. Science. [Link]
Jiang HW, Zhang HN, et al. (2020). SARS-CoV-2 Orf9b suppresses type I interferon responses by targeting TOM70. Cellular & Molecular Immunology. [Link]
Jiang HW, Li Y, et al. (2020). SARS-CoV-2 proteome microarray for global profiling of COVID-19 specific IgG and IgM responses. Nature Communications. [Link]
赖丹昀,胡传圣,祁环,马明亮,李华,陶生策. (2020) 基于噬菌体展示和高通量测序的血清抗体整体质量评估体系研究. 上海交通大学学报(医学版). [Link]
Li R, Chen J, et al. (2020). Mini-Disk Capillary Array Coupling with LAMP for Visual Detection of Multiple Nucleic Acids using Genetically Modified Organism Analysis as an Example. J Agric Food Chem. [Link]
Li Y, Lai DY, et al. (2020). Linear epitopes of SARS-CoV-2 spike protein elicit neutralizing antibodies in COVID-19 patients. Cell Mol Immunol. [Link]
Li Y, Li CQ, et al. (2020). Longitudinal serum autoantibody repertoire profiling identifies surgery-associated biomarkers in lung adenocarcinoma. EBioMedicine. [Link]
Wang Z, Li Y, et al. (2020). An array of 60,000 antibodies for proteome-scale antibody generation and target discovery. Sci Adv. [Link]
Wang J, Tian GG, et al. (2020). Integrated Glycosylation Patterns of Glycoproteins and DNA Methylation Landscapes in Mammalian Oogenesis and Preimplantation Embryo Development. Front Cell Dev Biol. [Link]
王雪宁,朱元首,江何伟,陶生策. (2020). 新型冠状病毒(SARS-CoV-2)的检测技术. 生命的化学. [Link]
Wu SF, Xia L, et al. (2020). RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation. Proc Natl Acad Sci U S A. [Link]
郑云萧,江何伟,陶生策. (2020). 三种强致病性冠状病毒与人蛋白质相互作用研究进展. 生命的化学. [Link]
Sheng-Ce Tao, Shumin Zhou. (2020) Sketching the Glycan Hallmark of Intact Cells Using Lectin Microarray. In book: Glycan-Based Cellular Communication: Techniques for Carbohydrate-Protein Interactions. [Link]
Zhu YS, Shao N, et al. (2020). Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification. Analytica Chimica Acta. [Link]

2019 🔼

Qi H, Wang F, Tao SC. (2019). Proteome microarray technology and application: higher, wider, and deeper. Expert Review of Proteomics. [Link]
Huang JG, Huang LK, Cai KB. (2019). RIBOi: a database for ribosome-interacting proteins. Acta Biochimica et Biophysica Sinica. [Link]
江何伟,郑云萧,陶生策. (2019). 基于蛋白质组芯片的结核分枝杆菌系统生物学研究进展. 微生物学通报. [Link]
Wei S, Wang DB, et al. (2019). Fatty acylCoA synthetase FadD13 regulates proinflammatory cytokine secretion dependent on the NF-κB signalling pathway by binding to eEF1A1. Cellular Microbiology. [Link]
Wu FL, Lai DY, et al. (2019). Identification of Serum Biomarkers for Systemic Lupus Erythematosus Using a Library of Phage Displayed Random Peptides and Deep Sequencing. Molecular & Cellular Proteomics. [Link]
Xu ZW, Zhang HN, et al. (2019). Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP. EMBO JOURNAL. [Link]

2018 🔼

Cheng L, Liu C, et al. (2018). Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks. Mol Cell Proteomics. [Link]
Jiang HW, Czajkowsky DM, et al. (2018). Identification of Serine 119 as an Effective Inhibitor Binding Site of M. tuberculosis Ubiquitin-like Protein Ligase PafA Using Purified Proteins and M. smegmatis. EBioMedicine. [Link]
Chen Z, Dodig-Crnković T, Schwenk JM, Tao SC. (2018). Current applications of antibody microarrays. Clin Proteomics. [Link]
Yang L, Yang Z, et al. (2018). Lectin Microarray Combined with Mass Spectrometry Identifies Haptoglobin-Related Protein (HPR) as a Potential Serologic Biomarker for Separating Nonbacterial Pneumonia from Bacterial Pneumonia in Childhood. Proteomics Clin Appl. [Link]
Xin AJ, Wu YC, et al. (2018). Comparative analysis of human sperm glycocalyx from different freezability ejaculates by lectin microarray and identification of ABA as sperm freezability biomarker. Clin Proteomics. [Link]

2017 🔼

He X, Jiang HW, et al. (2017). Systematic Identification of Mycobacterium tuberculosis Effectors Reveals that BfrB Suppresses Innate Immunity. Mol Cell Proteomics. [Link]
Chen JW, Shao N, et al. (2017). Visual Detection of Multiple Nucleic Acids in a Capillary Array. JoVE. [Link]
Zhang HN, Xu ZW, et al. (2017). Cyclic di-GMP regulates Mycobacterium tuberculosis resistance to ethionamide. Sci Rep. [Link]
Wu FL, Liu Y, et al. (2017). The Ser/Thr Protein Kinase Protein-Protein Interaction Map of M. tuberculosis. Mol Cell Proteomics. [Link]
刘殷,杨丽娜,张海南,陶生策. (2017). 大肠埃希菌蛋白质组芯片对砷相互作用蛋白的检测分析. 上海交通大学学报(医学版). [Link]
陈建伟,邵宁,张雨晨,朱元首,杨立桃,陶生策. (2017). 一种载样简单的多重可视化PCR微芯片. 遗传. [Link]
Xu Z, Li X, et al. (2017). Systematic identification of the protein substrates of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-T1/T2/T3 using a human proteome microarray. Proteomics. [Link]
Shao N, Chen J, et al. (2017). Visual detection of multiple genetically modified organisms in a capillary array. Lab Chip. [Link]

2016 🔼

Qi H, Zhou H, et al. (2016). Rapid production of virus protein microarray using Protein microArray fabrication through GEne Synthesis (PAGES). Mol Cell Proteomics. [Link]
Cheng X, Liu YQ, et al. (2016). Proteomic identification of the oncoprotein STAT3 as a target of a novel Skp1 inhibitor. Oncotarget. [Link]
Sun Y, Cheng L, et al. (2016). A Human Lectin Microarray for Sperm Surface Glycosylation Analysis. Mol Cell Proteomics. [Link]
Men D, Zhou J, et al. (2016). Fluorescent protein nanowire-mediated protein microarrays for multiplexed and highly sensitive pathogen detection. ACS Appl Mater Interfaces. [Link]
Qian L, Nie L, et al. (2016). Global Profiling of Protein Lysine Malonylation in Escherichia coli Reveals Its Role in Energy Metabolism. J Proteome Res. [Link]
ZQ Chen, HN Zhang, et al. (2016). Construction of a metabolomics profile of arsenic trioxide effect in gastric carcinoma cell line SGC7901. Acta Biochim Biophys Sin. [Link]
Xin A, Cheng L, et al. (2016). Lectin binding of human sperm associates with DEFB126 mutation and serves as a potential biomarker for subfertility. Scientific Reports. [Link]
Xu Z, Huang L, et al. (2016). PMD: A Resource for Archiving and Analyzing Protein Microarray data. Scientific Reports. [Link]
Yang L, Wang J, et al. (2016). Identification of serum biomarkers for gastric cancer diagnosis using a human proteome microarray. Mol Cell Proteomics. [Link]

2015 🔼

Tu S, Guo SJ, et al. (2015). YcgC represents a new protein deacetylase family in prokaryotes. eLife. [Link]
Zhang HN, Yang L, et al. (2015). Systematic identification of arsenic-binding proteins reveals that hexokinase-2 is inhibited by arsenic. Proc Natl Acad Sci U S A. [Link]
Liu YQ, Wang XL, et al. (2015). Skp1 in lung cancer: Clinical significance and therapeutic efficacy of its small molecule inhibitors. Oncotarget. [Link]
Zhou SM, Cheng L, et al. (2015). Lectin RCA-I specifically binds to metastasis-associated cell surface glycans in triple-negative breast cancer. Breast Cancer Res. [Link]
Liao Y, Ling J, et al. (2015). Cordycepin induces cell cycle arrest and apoptosis by inducing DNA damage and up-regulation of p53 in Leukemia cells. Cell Cycle. [Link]
Hu B, Niu X, et al. (2015). Discovering cancer biomarkers from clinical samples by protein microarrays. Proteomics Clin Appl. [Link]

2014 🔼

RP Deng, X He, et al. (2014). Global Identification of O-GlcNAc Transferase (OGT) Interactors by a Human Proteome Microarray and the Construction of an OGT Interactome. Proteomics. [Link]
AJ Xin, L Cheng, et al. (2014). Comprehensive profiling of accessible surface glycans of mammalian sperm using a lectin microarray. Clin Proteomics. [Link]
CX Liu, FL Wu, et al. (2014). Global identification of CobB interactors by an Escherichia coli proteome microarray. Acta Biochim Biophys Sin (Shanghai). [Link]
XR Jiang, N Shao, et al. (2014). Microfluidic chip integrating high throughput continuous-flow PCR and DNA hybridization for bacteria analysis. Talanta. [Link]
刘诚喜,涂顺,郭书娟,陶生策.(2014). 细菌蛋白质乙酰化研究进展. 生命科学. [Link]
JY Deng, LJ Bi, et al. (2014). Mycobacterium tuberculosis Proteome Microarrayfor Global Studies of Protein Function and Immunogenicity. Cell Reports. [Link]
Shao N, Jiang SM, et al. (2014). SCMACRO: A Combined Microchip-PCR and Microarray System for High-Throughput Monitoring of Genetically Modified Organisms. Analytical Chemistry. [Link]

2013 🔼

Chen Y, et al. (2013). BAG3 Interactome Analysis Reveals a New Role in Modulating Proteasome Activity. Molecular Cellular Proteomics. [Link]
Cheng L, et al. (2013). Microarray partition using a recycled marker pen and neutral balsam. Acta biochimica et biophysica Sinica. [Link]
Zhang QF, Gu J, et al. (2013). Reversibly acetylated lysine residues play important roles in the enzymatic activity of Escherichia coli N-hydroxyarylamine O-acetyltransferase. FEBS. [Link]
Tu S, et al. (2013). Protein Microarrays for Studies of Drug Mechanisms and Biomarker Discovery in the Era of Systems Biology. Current pharmaceutical design. [Link]

2012 🔼

Wang ZX, Deng RP, et al. (2012). Global identification of prokaryotic glycoproteins based on an Escherichia coli proteome microarray. PLoS One. [Link]
Lu KY, Tao SC, et al. (2012). Profiling lipid-protein interactions using non-quenched fluorescent liposomal nanovesicles and proteome microarrays. Mol Cell Proteomics. [Link]
Wang ZX, Deng RP, et al. (2012). Protein microarray: an ideal platform for systems biology. Systems biology in cancer research and drug discovery. Systems Biology in Cancer Research and Drug Discovery. [Link]
Zhou SM, Cheng L, Guo SJ, Zhu H, Tao SC. (2012). Protein microarray: An ideal platform for the investigation of protein-ligand interactions. Frontiers in Biology. [Link]

2011 🔼

Li Y, Tao SC, et al. (2011). Detection and verification of glycosylation patterns of glycoproteins from clinical specimens using lectin microarrays and lectin-based immunosorbent assays. Anal Chem. [Link]
Li Y, Guo SJ, et al. (2011). A universal multiplex PCR strategy for 100-plex amplification using a hydrophobically patterned microarray. Lab Chip. [Link]
Zhou SM, Cheng L, Guo SJ, Zhu H, Tao SC. (2011). Lectin microarray: A powerful tool for glycan related biomarker discovery. Comb Chem High Throughput Screen. [Link]
Yang L, Guo S, Li Y, Zhou S, Tao SC. (2011). Protein microarrays for systems biology. Acta Biochim Biophys Sin. [Link]
Ge F, Tao S, Bi L, Zhang Z, Zhang X. (2011). Proteomics: addressing the challenges of multiple myeloma. Acta Biochim Biophys Sin. [Link]
Li Y, Tao SC, Zhu H, Schneck JP. (2011). High-throughput lectin microarray-based analysis of live cell surface glycosylation. Curr Protoc Protein Sci. [Link]
Ge F, Bi LJ, Tao SC, et al. (2011). Proteomic analysis of multiple myeloma: current status and future perspectives. Proteomics Clin Appl. [Link]
Ge F, Zhang L, Tao SC, et al. (2011). Quantitative proteomic analysis of tumor reversion in multiple myeloma cells. J Proteome Res. [Link]

2010 🔼

Ge F, Li WL, et al. (2010). Identification of novel 14-3-3ζ interacting proteins by quantitative immunoprecipitation combined with knockdown (QUICK). J Proteome Res. [Link]
Ge F, Xiao CL, et al. (2010). Quantitative phosphoproteomics of proteasome inhibition in multiple myeloma cells. PLoS One. [Link]
K Zhang, Y Chen, et al. (2010). Unrestrictive identification of non-phosphorylation PTMs in yeast kinases by MS and PTMap. Proteomics. [Link]

2009 🔼

YY Lin, JY Lu, et al. (2009). Protein Acetylation Microarray Reveals NuA4 Controls Key Metabolic Target Regulating Gluconeogenesis. Cell. [Link]
Li A. Kung, Sheng-Ce Tao, et al. (2009). Global Analysis of S. cerevisiae Proteome Reveals New Roles for Protein Glycosylation in Eucaryotes. Molecular Systems Biology. [Link]

~2008 🔼

YM Zhou, RQ Yang, SC Tao, et al. (2005). The design and application of DNA chips for early detection of SARS-CoV from clinical samples. Journal of clinical virology. [Link]
SC Tao, Heng Zhu. (2006). Protein chip fabrication by capture of nascent polypeptides. Nature Biotechnology. [Link]
SC Tao, CS Chen, Heng Zhu (2007). Applications of protein microarray technology. Combinatorial Chemistry & High Throughput Screening. [Link]
JY Lu, YY Lin, et al. (2008). Functional dissection of a HECT ubiquitin E3 ligase. Molecular and Cellular Proteomics. [Link]
CS Chen, Ekaterina Korobkova, et al. (2008). A Proteome Chip Approach Reveals New DNA Base Damage Recognition Activities in Escherichia coli. Nature Methods. [Link]
Kenyon M. Evans-Nguyen, SC Tao, et al. (2008). Protein Arrays on Patterned Porous Gold Substrates Interrogated with Mass Spectrometry: Detection of Peptides in Plasma. Analytical Chemistry. [Link]
SC Tao, Y Li, et al. (2008). Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers. Glycobiology. [Link]